The visualization of ESEA in a pathway
Usage
pESEA(
pathway_name,
Ranks_all,
out = "Extended",
gseaParam = 0.5,
minSize = 5,
ticksSize = 0.2
)Arguments
- pathway_name
the pathway name for plot
- Ranks_all
the Named vector of compound-level and (or) gene-level stats. Names should be KEGG ID and(or) gene-level
- out
The pathway type for gene or metabolite,or extended pathway included genes and metabolites,default is "Extended",alternative is "metabolite" and "gene"
- gseaParam
GSEA parameter value, all compound-level and(or) gene-level stats are raised to the power of 'gseaParam' before calculation of GSEA enrichment scores.
- minSize
Minimal size of a compound and(or) gene set to test. All pathways below the threshold are excluded.
- ticksSize
width of vertical line corresponding to a compound or gene(default: 0.2)
