3 Metabolic Network

The metabolism-related subnetwork analysis is executed through an analyzer specifically designed to identify subnetwork based on input gene- and metabolite-level summary data.

3.1 Meta-Gene Network

Procedure

  • Step 1: Enter Metabolite Data, GeneExp Data and Group Data, respectively.

  • Step 2: Select Nodes Number.

    In R network analysis, nodes number refers to the total count of nodes, representing individual elements or entities within the network.

  • Step 3: Select Figure Format and adjust figure width, height and DPI.

  • Step 4: click Figure Download to export analysis result.

Results

By utilising the dbNet knowledgebase and employing the dnet algorithm, MNet analyses a list of genes and metabolites along with their significance information, allowing a graphical display of the metabolism-related subnetwork that contains both genes and metabolites